{ "_id": "6a5483bfff0138dec5d648ab", "Package": "plsmselect", "Title": "Linear and Smooth Predictor Modelling with Penalisation and\nVariable Selection", "Version": "0.2.0", "Authors@R": "c(person(\"Indrayudh\", \"Ghosal\", email = \"ig248@cornell.edu\", role = c(\"aut\", \"cre\")),\nperson(\"Matthias\", \"Kormaksson\", email = \"matthias.kormaksson@novartis.com\", role = \"aut\"))", "Description": "Fit a model with potentially many linear and smooth\npredictors. Interaction effects can also be quantified.\nVariable selection is done using penalisation. For l1-type\npenalties we use iterative steps alternating between using\nlinear predictors (lasso) and smooth predictors (generalised\nadditive model).", "License": "GPL-2", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.0.1", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-13 06:16:55 UTC", "User": "root" }, "Author": "Indrayudh Ghosal [aut, cre], Matthias Kormaksson [aut]", "Maintainer": "Indrayudh Ghosal ", "Repository": "https://indrayudhghosal.r-universe.dev", "Date/Publication": "2019-11-24 08:50:03 UTC", "RemoteUrl": "https://github.com/cran/plsmselect", "RemoteRef": "HEAD", "RemoteSha": "d93f1849b3bfae8296ce8e4b6027be80fe390d19", "_user": "indrayudhghosal", "_type": "src", "_file": "plsmselect_0.2.0.tar.gz", "_fileid": "https://r2.ropensci.org/bd11ba29661da8e0a9f8f8cc78181c90e91eefadbac5bf2a80367d0201d28157", "_filesize": 608431, "_sha256": "bd11ba29661da8e0a9f8f8cc78181c90e91eefadbac5bf2a80367d0201d28157", "_expires": "2026-10-21T06:20:45.000Z", "_created": "2026-07-13T06:16:55.000Z", "_published": "2026-07-13T06:20:46.927Z", "_jobs": [ { "job": 86747621865, "time": 144, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8270678972" }, { "job": 86747621839, "time": 138, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8270677523" }, { "job": 86747621829, "time": 178, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8270680402" }, { "job": 86747621891, "time": 186, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8270682013" }, { "job": 86747142395, "time": 198, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8270637699" }, { "job": 86747621828, "time": 109, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8270669424" }, { "job": 86747621845, "time": 83, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8270662494" }, { "job": 86747621851, "time": 104, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8270668200" }, { "job": 86747621824, "time": 83, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8270662506" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/indrayudhghosal/actions/runs/29228355250", "_status": "success", "_upstream": "https://github.com/cran/plsmselect", "_commit": { "id": "d93f1849b3bfae8296ce8e4b6027be80fe390d19", "author": "Indrayudh Ghosal ", "committer": "cran-robot ", "message": "version 0.2.0\n", "time": 1574585403 }, "_maintainer": { "name": "Indrayudh Ghosal", "email": "ig248@cornell.edu", "login": "indrayudhghosal", "description": "", "uuid": 35879117 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "dplyr", "version": ">= 0.7.8", "role": "Imports" }, { "package": "glmnet", "version": ">= 2.0.16", "role": "Imports" }, { "package": "mgcv", "version": ">= 1.8.26", "role": "Imports" }, { "package": "survival", "version": ">= 2.43.3", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "kableExtra", "role": "Suggests" }, { "package": "purrr", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "indrayudhghosal", "count": 2, "uuid": 35879117 } ], "_userbio": { "uuid": 35879117, "type": "user", "name": "IndrayudhGhosal", "followers": 0 }, "_downloads": { "count": 243, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/plsmselect" }, "_searchresults": 15, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/plsmselect.html", "manual.pdf" ], "_realowner": "indrayudhghosal", "_cranurl": false, "_releases": [ { "version": "0.1.3", "date": "2019-07-19" }, { "version": "0.2.0", "date": "2019-11-24" } ], "_exports": [ "cumbasehaz", "gamlasso", "gamlassoChecks", "gamlassoFit" ], "_datasets": [ { "name": "simData", "title": "Simulated dataset to be used for gamlasso", "object": "simData", "class": [ "data.frame" ], "fields": [ "id", "x1", "x2", "x3", "x4", "x5", "x6", "x7", "x8", "x9", "x10", "z1", "z2", "z3", "z4", "lp", "Yg", "Yb", "Yp", "success", "failure", "time", "status" ], "rows": 100, "table": true, "tojson": true } ], "_help": [ { "page": "cbh", "title": "Internal Function", "topics": [ "cbh" ] }, { "page": "create_dataset", "title": "Function to create the simulated dataset", "topics": [ "create_dataset" ] }, { "page": "cumbasehaz", "title": "Cumulative Baseline Hazard of a gamlasso object", "topics": [ "cumbasehaz" ] }, { "page": "find_family", "title": "Internal Function", "topics": [ "find_family" ] }, { "page": "formula_setup", "title": "Internal Function", "topics": [ "formula_setup" ] }, { "page": "gamlasso", "title": "Fitting a gamlasso model", "topics": [ "gamlasso", "gamlasso.default", "gamlasso.formula" ] }, { "page": "gamlassoChecks", "title": "Checking data before fitting gamlasso", "topics": [ "gamlassoChecks" ] }, { "page": "gamlassoFit", "title": "The function fitting a gamlasso model", "topics": [ "gamlassoFit" ] }, { "page": "lasso_gam_loop", "title": "Internal Function", "topics": [ "lasso_gam_loop" ] }, { "page": "meandist", "title": "Internal Function", "topics": [ "meandist" ] }, { "page": "nzeros", "title": "Internal Function", "topics": [ "nzeros" ] }, { "page": "predict.gamlasso", "title": "Prediction from a fitted gamlasso model", "topics": [ "predict.gamlasso" ] }, { "page": "print.gamlasso", "title": "Print a gamlasso object", "topics": [ "print.gamlasso" ] }, { "page": "readconfirm", "title": "Internal Function", "topics": [ "readconfirm" ] }, { "page": "simData", "title": "Simulated dataset to be used for gamlasso", "topics": [ "simData" ] }, { "page": "summary.gamlasso", "title": "Summary for a gamlasso fit", "topics": [ "summary.gamlasso" ] } ], "_rundeps": [ "cli", "codetools", "dplyr", "foreach", "generics", "glmnet", "glue", "iterators", "lattice", "lifecycle", "magrittr", "Matrix", "mgcv", "nlme", "pillar", "pkgconfig", "R6", "Rcpp", "RcppEigen", "rlang", "shape", "survival", "tibble", "tidyselect", "utf8", "vctrs", "withr" ], "_vignettes": [ { "source": "plsmselect.Rmd", "filename": "plsmselect.html", "title": "The plsmselect package", "author": "Indrayudh Ghosal and Matthias Kormaksson", "engine": "knitr::rmarkdown", "headings": [ "1. Introduction", "2. Methods", "The GAMLASSO algorithm", "Background on fitting a generalized additive model (gam)", "3. Examples", "Simulated dataset", "Gaussian GAMLASSO model with plsmselect", "Poisson GAMLASSO regression with plsmselect", "Binary logistic GAMLASSO regression with plsmselect", "Binomial counts GAMLASSO model with plsmselect", "Cox GAMLASSO with plsmselect", "A. Appendix", "Data simulation (details)", "References" ], "created": "2019-07-19 07:40:02", "modified": "2019-11-24 08:50:03", "commits": 2 } ], "_score": 2.1760912590556813, "_indexed": true, "_nocasepkg": "plsmselect", "_universes": [ "indrayudhghosal" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.0", "date": "2026-07-13T06:19:13.000Z", "distro": "resolute", "commit": "d93f1849b3bfae8296ce8e4b6027be80fe390d19", "fileid": "https://r2.ropensci.org/1fdd6ccffb3fa54c56e2ad6e04413be3a527fb5742491ecd27acbd7948b287f0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/indrayudhghosal/actions/runs/29228355250" }, { "r": "4.6.1", "os": "linux", "version": "0.2.0", "date": "2026-07-13T06:19:09.000Z", "distro": "resolute", "commit": "d93f1849b3bfae8296ce8e4b6027be80fe390d19", "fileid": "https://r2.ropensci.org/5ab0a85782ff547d7de90a64ea0f5c57544068889f19d0d3bab228eae39903fc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/indrayudhghosal/actions/runs/29228355250" }, { "r": "4.5.3", "os": "mac", "version": "0.2.0", "date": "2026-07-13T06:19:24.000Z", "commit": "d93f1849b3bfae8296ce8e4b6027be80fe390d19", "fileid": "https://r2.ropensci.org/d59f32173995250e9a3feea9b9db62ba2fdccc2140200ef486555cb79d67586c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/indrayudhghosal/actions/runs/29228355250" }, { "r": "4.6.1", "os": "mac", "version": "0.2.0", "date": "2026-07-13T06:19:24.000Z", "commit": "d93f1849b3bfae8296ce8e4b6027be80fe390d19", "fileid": "https://r2.ropensci.org/791cc2650d97bf2ea7071edf1cbd8ab08d7fad115ad88bbb924416cfd8de2bcc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/indrayudhghosal/actions/runs/29228355250" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.0", "date": "2026-07-13T06:19:03.000Z", "commit": "d93f1849b3bfae8296ce8e4b6027be80fe390d19", "fileid": "https://r2.ropensci.org/2103ea96393394674d2a9934393b04bc5564f78fe3170841b56777aa3e6e8b6c", "status": "success", "buildurl": "https://github.com/r-universe/indrayudhghosal/actions/runs/29228355250" }, { "r": "4.7.0", "os": "win", "version": "0.2.0", "date": "2026-07-13T06:18:07.000Z", "commit": "d93f1849b3bfae8296ce8e4b6027be80fe390d19", "fileid": "https://r2.ropensci.org/5b0e23d8e85c7c2008e3698f5c615fee6e694aaf23ba63ec1732fdbdfdf61b4b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/indrayudhghosal/actions/runs/29228355250" }, { "r": "4.5.3", "os": "win", "version": "0.2.0", "date": "2026-07-13T06:18:18.000Z", "commit": "d93f1849b3bfae8296ce8e4b6027be80fe390d19", "fileid": "https://r2.ropensci.org/3ca449ec03444c0308877949fa5ce735b5729a77aebdde3dc8730dbb89e73dc3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/indrayudhghosal/actions/runs/29228355250" }, { "r": "4.6.1", "os": "win", "version": "0.2.0", "date": "2026-07-13T06:18:06.000Z", "commit": "d93f1849b3bfae8296ce8e4b6027be80fe390d19", "fileid": "https://r2.ropensci.org/c30c349db95917df31b861c7c97ca45f0c7e37a3fc257a692eb606eb065c9377", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/indrayudhghosal/actions/runs/29228355250" } ] }